Cell Maps Generate Hierarchy

The Cell Maps Generate Hierarchy is part of the Cell Mapping Toolkit

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The Cell Maps Generate Hierarchy Tool generates hierarchy from Cell Maps Coembedding using HiDeF. It accepts one or more coembedding directories corresponding to multiple folds of the same data.

The tool creates an output directory where results are stored and registered within Research Object Crates (RO-Crate) using the FAIRSCAPE-cli.

Overview of Cell Maps Generate Hierarchy

Overview of Cell Maps Generate Hierarchy which calculating cosine similarities for embeddings followed by protein to protein interaction networks creation, HiDeF invocation to generate hierarchy, and finally hierarchy "maturation"

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